data/db/test_ref.fa.fai
data/test.gap.fa
data/test.gap.qual.txt
data/test.indel*.tsv
data/test.masked_primer_indices.txt
data/test.trimmed.masked.bam
data/test.trimmed.masked.bam.bai
data/test.trimmed.sorted.bam.bai
data/test.unmapped.sorted.bam.bai
data/trim_isize.bam
src/ivar
src/*.o
tests/check_allele_depth
tests/check_amplicon_search
tests/check_common_variants
tests/check_consensus
tests/check_consensus_min_depth
tests/check_consensus_min_insert_threshold
tests/check_consensus_seq_id
tests/check_consensus_threshold
tests/check_getmasked
tests/check_interval_tree
tests/check_isize_trim
tests/check_isize_trim
tests/check_primer_bed
tests/check_primer_trim
tests/check_primer_trim_edge_cases
tests/check_quality_trim
tests/check_removereads
tests/check_trim
tests/check_unpaired_trim
tests/check_variants
tests/*.o
