Source: libgoby-java
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Pierre Gruet <pgt@debian.org>,
           Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
               maven-debian-helper,
               javahelper,
               default-jdk,
               ant,
               ant-contrib,
               libjbzip2-java,
               libcommons-collections3-java,
               libcommons-configuration-java,
               libcommons-exec-java,
               libcommons-io-java,
               libcommons-lang-java,
               libcommons-logging-java,
               libcommons-math-java,
               libcommons-cli-java,
               libdistlib-java,
               liblog4j1.2-java,
               libexec-maven-plugin-java,
               libjaxb-api-java,
               libmaven-assembly-plugin-java,
               libmaven-antrun-plugin-java,
               libbuild-helper-maven-plugin-java,
               libmaven-dependency-plugin-java,
               libmaven-source-plugin-java,
               libmaven-javadoc-plugin-java,
               libprotobuf-java,
               libhtsjdk-java,
               libfastutil-java,
               protobuf-compiler,
               libjsap-java,
               libdsiutils-java,
               libicb-utils-java,
               libreflections-java,
               libpj-java,
               libprotobuf-dev,
               pkg-config,
               r-cran-rjava,
               libeasymock-java <!nocheck>,
               junit4 <!nocheck>,
               testng <!nocheck>,
               libpicard-java <!nocheck>
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/libgoby-java/
Vcs-Git: https://salsa.debian.org/med-team/libgoby-java.git
Homepage: http://campagnelab.org/software/goby/
Rules-Requires-Root: no

Package: libgoby-io-java
Architecture: all
Depends: ${shlibs:Depends},
         ${misc:Depends},
         ${maven:Depends},
         libcommons-collections3-java,
         libjbzip2-java,
         libpj-java
Recommends: ${java:Recommends},
            ${maven:OptionalDepends}
Description: IO API for goby
 Goby is a next-gen data management framework designed to facilitate the
 implementation of efficient data analysis pipelines.
 .
 Goby provides very efficient file formats to store next-generation sequencing
 data and intermediary analysis results.
 .
 This package contains the Goby IO API, including code necessary to read and
 write Goby file formats. It is released under the LGPL3 license.

Package: goby-java
Architecture: all
Depends: ${shlibs:Depends},
         ${misc:Depends},
         ${maven:Depends},
         default-jre,
         libgoby-io-java (= ${binary:Version}),
         libdistlib-java,
         libjaxb-api-java,
         r-cran-rjava
Recommends: ${java:Recommends},
            ${maven:OptionalDepends}
Description: next-generation sequencing data and results analysis tool
 Goby is a next-gen data management framework designed to facilitate the
 implementation of efficient data analysis pipelines.
 .
 Goby provides very efficient file formats to store next-generation sequencing
 data and intermediary analysis results.
 .
 Goby also provides utilities that implement common next-gen data computations.
 These utilities are designed to be relatively easy to use, yet very efficient.
 .
 This package provides the entire Goby framework, including application
 programs (i.e., Goby modes). It is released under the GPL3 license.
