0284338bd54195c6789fa2ce79059dd1 *DESCRIPTION
3b70ee7c09062a379bb86898b959929e *NAMESPACE
dd981a8bc19bea5e91c256f75ea8b5c9 *R/AAstat.R
7175d6708d717dca65176df83a41f9bd *R/ClassSeq.R
1e91dc3520dc9fd00e6e78da768c4b2e *R/GC.R
70a6096826f0afd764d1983e182ecbca *R/PI.R
053a0187d0fb50f067967b45e2cbbcac *R/R_socket.R
d0fddeea0d82c2ce6be501fb845e68db *R/acnucclose.R
b899f1793668edaf00f2fc34bf3f8156 *R/acnucopen.R
6c231aebdc9d78beed8b128ca9497b3a *R/al2bp.R
f1c181a43cd515afc40912c23d57b48f *R/allistranks.R
e8ca816b2688ccdff894fe7484a5219b *R/amb.R
dcb9fdf6787b486e715eb32fcad782f9 *R/as.alignment.R
23dd9489492a03efabb30f8b942db543 *R/as.matrix.alignment.R
ef4ecfea9f3ba3e7fa6d4d22d3fc5c87 *R/autosocket.R
79270da6013f8c0da557d49df4c6fb93 *R/baselineabif.R
5703b2a2d40aff5cdb4fe98e03b1806c *R/bma.R
e8d88ddfefb2671a94f95c53e8c22c57 *R/cai.R
5f15ab5f63f71b752039ca1ced27a28b *R/choosebank.R
812ffd4010c7035837d2fd0d4db290f5 *R/circle.R
d8fab11dbb02bd793828704fb6903c51 *R/clfcd.R
b25f52a33ccb2f6f66fcb30e1e74680e *R/clientid.R
00bc719de0ccf65560a86ec794b760fe *R/closebank.R
f6f6dc5c585d71ee9e664db3d9e9453a *R/col2alpha.R
30186c71eeb99c6ab29d1104581701d4 *R/comp.R
26ff4107c8fc92f96020fc8551688aa9 *R/consensus.R
70903c3ea1da6bcb6d2b0b77960f86a7 *R/count.R
3d5c97c10129de81da8b0b7c8006bdf3 *R/countfreelists.R
e354a7785d3f515d4311ddf75b54fc71 *R/countsubseqs.R
170a8077be5e66cd08ca1fba10209d24 *R/db.growth.R
1394355049f1bb135f481a50508994d5 *R/dia.bactgensize.R
d47075fe840da6f000af83ece511af2c *R/dist.alignment.R
3dc6f329eea0d8db614bfb6ded99c056 *R/dotPlot.R
e7c8d78234ac7a398766943c2b179d91 *R/draw.oriloc.R
c5d3818fb836288a75c41ce6dd7c19e0 *R/draw.rearranged.oriloc.R
4f7b1e44bac0700d4d313876c1f19639 *R/draw.recstat.R
84a41f6ea4e2a1f56e71219479d1bbbb *R/extract.breakpoints.R
f63369317124465d1398876fb16db936 *R/extractseqs.R
7cbf5e8324af34371d3917496bc23dfa *R/fastacc.R
2eb523fd0fad59f6c362a292325aa2e1 *R/gb2fasta.R
2d5372f6f01f90ea00be0599d686cfbc *R/gbk2g2.R
5c25127bfa87a9c0ae5cc0303e2d5760 *R/gbk2g2.euk.R
56a71d800186da36f5817641353d1bb3 *R/get.ncbi.R
97394927a67bc9051c6c2d897e2b4c8c *R/getAnnot.R
06ee37a0f5cdfc6ac972635c90a4ca2d *R/getFrag.R
6f45dd26e77c33f1a68b30394df40537 *R/getKeyword.R
23fce6b1210002e46135ee9ee22097ac *R/getLength.R
bd6ff768d092ad6573c2b719c7d2399d *R/getLocation.R
c4b6fc3ccb3bcdec62bdebced9263660 *R/getName.R
0a36d73d9d155c5b7a3704ab73bee883 *R/getSequence.R
5f3525ffdeb401675378531efa06094b *R/getTrans.R
b582f5a822b09825f9f4dabc2e220cc4 *R/getType.R
77de234689104f105b66bdaf4ebbd886 *R/getlistrank.R
31a6e8b2f9594596d677b57f3906b677 *R/getliststate.R
e2af7c88e0e7c42cbb6e6208aa6364d8 *R/gfrag.R
1b9650fd96f5cbce29b1b79015ad99c5 *R/ghelp.R
ade42b1d2a6034de880e6676cf1f5da5 *R/isenum.R
22d9950d657c07d38f245a908f615150 *R/kaks.R
106b5a8d04534e8441081bdadc23959f *R/knowndbs.R
3ea277d7f032f1d31004cda14e46fbab *R/lseqinr.R
6e4f1e677e5d870e8c5b3bf57fa25b91 *R/modifylist.R
a3da681f32a58026a42e57d6a5baa03c *R/move.R
cad4c19aacedadf9dd534ea62149a4d1 *R/oriloc.R
94847d1d09e2ea265da9f736f732487a *R/parser.socket.R
c0fd92be7137f64874e66a0d3e3f713d *R/peakabif.R
daadbfebc84beef3d1e3fa1b511d1d82 *R/permutation.R
501e668ee6fcdaa032058914567191d4 *R/plot.SeqAcnucWeb.R
2869a2eb6a2c8a3dcf8d70cdb136d6c4 *R/plotPanels.R
8d5d7797b913d7eb039c5e2a125ff5ec *R/plotabif.R
edc4cc62d55ced70244d2db9bb71b815 *R/plotladder.R
ae47cf06593fc89cb8a105dfb69b6e93 *R/pmw.R
6e740c9d557d3f42fd31ce5ba3067a9c *R/prepgetannots.R
0e735cb30f6e370e4e494ad9dcba14d1 *R/prettyseq.R
cb9f8a17e0bdafa1fe7b8a4584eb8ab0 *R/query.r
126d5ade572e95511b2b66b7189807d9 *R/quitacnuc.R
5c829cc5536f04c051d686cf1b553859 *R/read.abif.R
cd01848c36d492f00c5d9d9235297ce5 *R/read.alignment.R
74dc8eccdaa92471db377908c17c45e8 *R/read.fasta.R
8a46bbfddc96af2244eb21d7fa7157b6 *R/readBins.R
7fa1d45bb89c1229cd494c007ce94d5f *R/readPanels.R
5d684c3f0beda26fa6e1d9bfd063680d *R/readfirstrec.R
12b4af8afe3c4af7b65070201db7082c *R/readsmj.R
a66ca45fe3eee9933fde7ba89d3302dd *R/rearranged.oriloc.R
98f98cdd0cb535cce91bad01c47192d0 *R/recstat.R
e27d133de947ce3880ed4e300c676a84 *R/residuecount.R
ca1c94e97783b4a68a30df6ab1cad560 *R/reverse.align.R
6b928f22960b6446a41f5b305555979c *R/rho.R
8f025ccd0924af255f041a917f7a3787 *R/rot13.R
50393c64f02c89723db803c22366329f *R/s2n.R
be01cbe2fc2ee4b08079bc7b8b396e01 *R/savelist.R
848e8f8bd67e29e39e1e46a026d003b4 *R/setlistname.R
29e473837b15cb94cb62419eab7a93e5 *R/splitseq.R
b081eb607b9782f99653e50cfb1e9d3f *R/stresc.R
b06cb8115a0f2f568cbc8946908a52ee *R/stutterabif.R
46ac2ee30965434e3687b259691a69cd *R/swap.R
8d839f703e9e1acdb5457b7797b935df *R/synonymous.R
478b66c88728d9d18b394b4868b00f58 *R/tablecode.R
0134ec6749f84bc8aa7596850f784316 *R/test.co.recstat.R
ab86b9a3f2568f102986b6fb93a545bc *R/test.li.recstat.R
a3350838cdb114e256e2441990c0dfa1 *R/translate.R
db37533bde4cb23943363ec1649c395b *R/trimSpace.R
30f245251279c3e71f13f4e96ef30079 *R/uco.R
3c550b2b0e6b7f012c5884ec97a5f2b3 *R/util.R
5c6a726318b034002ec8478005d0ec54 *R/where.is.this.acc.R
4e4e196dab3926727e78e6af44616ebd *R/words.R
a56eb0ff10c2eb36431885fa78e0fdb8 *R/words.pos.R
901a3e25d99b926ba56d0939b769cc83 *R/write.fasta.R
6daeda4870b681a9def5e87b0c2a692c *R/zscore.R
ea19296be5d7a3f1b140870e3b4a15b8 *data/AnoukResult.RData
eb878a6e6b9d14b71e8087bfa8b48e83 *data/ECH.RData
de9290e433b88b3f3e6bb3bd097ce6f7 *data/EXP.RData
30ff55cd0ba2eb880bf24f9f18dd3c2f *data/JLO.RData
8afb67475921ec3e19421e8b6ec14fad *data/SEQINR.UTIL.RData
84c523c60ce418ed92be16843bfcee3e *data/aacost.RData
182d49b83058fec4b2e598bc67f8aab8 *data/aaindex.RData
5067de8a65ef14192175adafacd09f10 *data/caitab.RData
1cf15d14086c5ec3902588566991a3c2 *data/chargaff.RData
404c57c07d51d97f299311bdad544f52 *data/clustal.RData
806f1a3796b1e80cb87cb5b538b2586f *data/datalist
fd618179e4a255d050f11b3a0d26b071 *data/dinucl.RData
419e3ac8e03a231b8a3deee6ee7304c1 *data/ec999.RData
f7ea1c805778ce74ca2b4e71a51c0517 *data/fasta.RData
b9b7156bc1dcbba98652c0d8059ad502 *data/gs500liz.RData
e0c8f373f9c219734d79f691690cfbf4 *data/identifiler.RData
da630203c264682843df0ac6f4990682 *data/m16j.RData
4c634963b683e1c482c290246bb653e1 *data/mase.RData
0685085138ccf0ea90b8f1f99e235879 *data/msf.RData
c364c99780adc69aacf6e3c770732e74 *data/pK.RData
9dc0cfe5d45504d6118b28060485473b *data/phylip.RData
323119cef9db1aa165131e70384d4c9c *data/prochlo.RData
790c1b2b350ac2bcec62c3d03978fdf2 *data/revaligntest.RData
8afb67475921ec3e19421e8b6ec14fad *data/sysdata.rda
1e653f58b55ccbdafb4e2025c1ceb4e5 *data/toyaa.RData
84dc39c9170f72a36c5800b04bef730e *data/toycodon.RData
9b18a34616f146e7445606ca3828a41c *data/waterabs.RData
6fc8e94f6a353747a8523c6306abe96e *inst/CITATION
79179e6254bc1f46eb07303d85aa084e *inst/abif/1_0000206138_C01_005.fsa
45ad0f3fea5bf2143fc74a810a519945 *inst/abif/1_FAC321_0000205983_B02_004.fsa
831e4bb52c0b2ab78a9246dca7e67d58 *inst/abif/2_0000206138_C01_005.fsa
88860b1ef18d69b54837a85b916ae697 *inst/abif/2_FAC321_0000205983_B02_004.fsa
a16fac50a201d4b38ec3204c8737df45 *inst/abif/AmpFLSTR_Bins_v1.txt
4e0288d7d9d76672c7ff8ff0d05fe0ad *inst/abif/AmpFLSTR_Panels_v1.txt
008e815eb4a7a94a46461d265c64ae78 *inst/abif/NGM_Bins.txt
9f64398f12a862adadc4ddea9374e5bf *inst/abif/NGM_Pa.txt
48281c9d741c32bfddc8ae63aefc8df0 *inst/abif/Promega_Bins_v1.txt
13d0415163c2b968875073df7abecc06 *inst/abif/Promega_Panels_v1.txt
118cf8e86dbab633734283bb8968aebd *inst/abif/Prototype_PowerPlex_EP01_Bins.txt
480c7bcaed36937e62d611aaea8845e7 *inst/abif/Prototype_PowerPlex_EP01_Pa.txt
115afc50e7118a18a18bb7078eb22e53 *inst/abif/samplefsa2ps.fsa
a162dc1c3b4461c33c1644320e84cea5 *inst/sequences/Anouk.fasta
b0706a24d5abe1df7af2c8038ca7bebb *inst/sequences/DarrenObbard.fasta
76b03fc33829fb97bd5d1a04d283a6ab *inst/sequences/ECOUNC.fsa
b3d34cd481e4f6bf843b78c5e17c079f *inst/sequences/UBIQUITIN.mase
ca11c1c6cecbb254b394ee24bff10d17 *inst/sequences/ame1.gbk
ce707593c6e9f43ac3f77f2276b2fc73 *inst/sequences/bb.acc
3ef93a6e32d1929ff3ee0abdb5ac96dd *inst/sequences/bb.kwd
8eb44c1f8c1e1b2d40bab5106ec657c3 *inst/sequences/bb.mne
cd5b7b52fe1bd7a49107cfe7a4fa1311 *inst/sequences/bb.sp
48ba932397d95293cf4b497773e83723 *inst/sequences/bordetella.fasta
e3ad28db2c00b341c41a805cadf73f9a *inst/sequences/bordetella.pep.aln
d0ff0477e562d8aa3c0979a4a33a2226 *inst/sequences/ecolicgpe5.fasta
6dc7e60dac18296f9e1d719f39f03b84 *inst/sequences/gopher.fasta
1d5bd50d5ff345e08cb37a8689303e0c *inst/sequences/gopher.names
cf31afbaea651a30e8f2b530483830bb *inst/sequences/hannah.txt
e03266d6ed9efa1dad9755a88e024565 *inst/sequences/humanMito.fasta
c56d8223a10995c70a6f965e46a06b44 *inst/sequences/input.dat
f82ee7968ac65ab690bdc1cfd10f055d *inst/sequences/input.out
1b714fae98378e5142d7ec658127ef36 *inst/sequences/legacy.fasta
d84b82c9cbc37133cb4d1f4e3c651878 *inst/sequences/louse.fasta
49138a950cfee1b2ebce2f95e6c4569c *inst/sequences/louse.names
065911f125ae3362e8f96bb2a00b8cd0 *inst/sequences/malM.fasta
7e22ca9211af371ebdbc483acec22bb7 *inst/sequences/ortho.fasta
a36f3e67af4df89313472eab72315b4d *inst/sequences/scuco.txt
1e41a172ef6a1eb538aa4471da6d2ac9 *inst/sequences/seqAA.fasta
27dd64cbdcdc43cc06b8c7cfdad2c3fb *inst/sequences/smallAA.fasta
717a230459ee63b4bf752db0af85ee7d *inst/sequences/someORF.fsa
05d2cec3375c0599b1872a0697f40b91 *inst/sequences/test.aln
b8cf915491772d56bfd779c64156c424 *inst/sequences/test.mase
2dc0b9b12f1f303cfb7cb6e88418718a *inst/sequences/test.msf
e775cbe3a62d9495d643758a7a43c9ab *inst/sequences/test.phylip
6f9086a9915fdf9a2dc6ccb05b02cb08 *man/AAstat.Rd
480f6af65151a2ec01a12b6c51713ef6 *man/AnoukResult.Rd
8d735c4f859717374f61bd4b8094060c *man/ECH.Rd
e1a01e448a737c7e48b91ebe2fa5d163 *man/EXP.Rd
3282dc01e3f5fe8721d47c978a2faf73 *man/GC.Rd
aeae19d233c41f0aab08ffa706febc9e *man/JLO.Rd
27c294bdb4593dfdd3840105562812f4 *man/SEQINR.UTIL.Rd
c708db824bead2b4fb4cdcfbbce7ba3d *man/SeqAcnucWeb.Rd
b8ed86627e21a0cee0e208bdc09d8f62 *man/SeqFastaAA.Rd
78e79e0e28cd1c507275a270f2a877e4 *man/SeqFastadna.Rd
6bb67ff63884d92fe7e3913f361ef8b2 *man/SeqFrag.Rd
fc74c74272afde3e5eb7d88be76f7e35 *man/a.Rd
b90f898cebb99c637c980184c40c5cc9 *man/aaa.Rd
3c1e97f7a02f13dc36bce3706b24d181 *man/aacost.Rd
cf17c6b4556bffdbc7b2cc56bf13298b *man/aaindex.Rd
9182b31c2c6776b7847e7fc76f6708eb *man/acnucopen.Rd
4472367be41364ac125ff53890311842 *man/al2bp.Rd
1f44d669a577c86facd5dee47c80dfb9 *man/alllistranks.Rd
fb21cd30626490caa2a88bb9c46edeea *man/amb.Rd
fd9d54e3baa8f42991dfc2d10a6fae64 *man/as.alignment.Rd
84e9ef1f9c61bc160a3e4a369879bfd7 *man/as.matrix.alignment.Rd
1dd3124c2c2563b8f1ea29c59c7f3ced *man/autosocket.Rd
441038ae274e763b08fb919baff18c33 *man/baselineabif.Rd
91b04fac048bec14ba53bd5b372617b4 *man/bma.Rd
4d2ec38861c67b4f63b5aa5e6073e955 *man/c2s.Rd
fd3a107f68cc6649b15a7d32e5e3745a *man/cai.Rd
46074b10c09034f3d482fbe99217d9fb *man/caitab.Rd
f033c4aa2b30b1935eca0d703a72bd8a *man/chargaff.Rd
6b5aa64a4f5ab2c2b415befeb9385871 *man/choosebank.Rd
fd469bea7adfc60d7730d80af5c51db8 *man/circle.Rd
ab61ec20db72ccfaa6cdc78e3bb04ed4 *man/closebank.Rd
ad182b206f059b71eafd4ebf8d5404d4 *man/clustal.Rd
06bae4306ad66fb9d4d99098468345da *man/col2alpha.Rd
1bb9fcff2735a69822e1f4b18008c78b *man/comp.Rd
611404a93fea635bc9b3d4b5df43c0f8 *man/computePI.Rd
2a869577f0b514b52637e852a67231f5 *man/consensus.Rd
bff1842775a06000a7ae886d5e1a37b2 *man/count.Rd
d9b68ec315127a2da0d6e1560df6e6ac *man/countfreelists.Rd
df6324f44d829583ddc7f78170388fd6 *man/countsubseqs.Rd
1c6ca25618518a6ad82ba7cfcb52f90c *man/crelistfromclientdata.Rd
4d917560c83082fb6e725bf707021c20 *man/dia.bactgensize.Rd
9463b95f58a2e0eae9c9d09f692fc607 *man/dinucl.Rd
a4db1548153f6b19a52e23ab7f7159eb *man/dist.alignment.Rd
fb1715453475d9bc554fa3803e9d1ed9 *man/dotPlot.Rd
80611705f4c883a67f55ebf519413ca2 *man/dotchart.uco.Rd
fa6e805e23060336b933bd4434d8b41a *man/draw.oriloc.Rd
36245e4af5b66f5335b6ddcd233bf376 *man/draw.rearranged.oriloc.Rd
5a566a4c5cb827b96e102c235327a46e *man/draw.recstat.Rd
0ce60aa3b99eb80027484357b18d2abc *man/ec999.Rd
2b6e24afa9d23b350ae08a55082e4c72 *man/extract.breakpoints.Rd
ebf4ec22c0c66dc4dd9ed83343efa744 *man/extractseqs.Rd
b6581a8afb3525c5b2ad07c2afa0bb7d *man/fasta.Rd
7db176b3b133d588023950b6a12577dc *man/fastacc.Rd
a62a4b1b55b7a02fcd9772f105e53cbd *man/gb2fasta.Rd
98bb5900bd6a01d71add8db5655ce889 *man/gbk2g2.Rd
6f51ac2f7a7591fa2020f84cf82e441a *man/gbk2g2.euk.Rd
abfa61e91573ff04886dc93f391687fe *man/get.db.growth.Rd
0f896961975c19ead231577e8dce682f *man/get.ncbi.Rd
4f78a407bf6763fdb3a78759782938b8 *man/getAnnot.Rd
2cb1cad5cc66a1f6403013081fda9853 *man/getFrag.Rd
614d9645dd761e7cf5d7ad52498b2bd1 *man/getKeyword.Rd
bc5ac32f2049e21757372cc226f7a8ea *man/getLength.Rd
0a6036f14be43d03cc0202c9973073d2 *man/getLocation.Rd
d6b3e3ae0b244a5d5597fa43434f7222 *man/getName.Rd
8b12df9e7ab6a790de6e99fe37c04f5a *man/getSequence.Rd
bd4f4db23338b811c39f183e7d71fe4a *man/getTrans.Rd
4542fd091ddabc2a70a703666f240fa9 *man/getType.Rd
624593ac4c8e9654472efd9cf316bcec *man/getlistrank.Rd
0aa8dd4dedc05bfeda4207c3f65969bf *man/getliststate.Rd
a97ffc1042ef1854f3d0511fbbfea036 *man/gfrag.Rd
adbe1f956bc310705ce47c66800f5566 *man/ghelp.Rd
79f3dc6846a328f749391c2333b840c5 *man/gs500liz.Rd
9e88c23480ad91dc30ad2e5f4a452932 *man/identifiler.Rd
f971be72cb4aed776332c6b0db5f3636 *man/isenum.Rd
5327fa2c316dde7886bc41d5e3302c0d *man/kaks.Rd
b6e705cc47dc97c778480e1bbce35313 *man/knowndbs.Rd
1cf0950845a92453b5da7de4bc4f78cc *man/lseqinr.Rd
ec975d166e884539bc374d487c3e40da *man/m16j.Rd
0c91047619417b66e80545dd84dafb09 *man/mase.Rd
b68373d0d47d2754a46f3146727ce4c1 *man/modifylist.Rd
96840e8d8498949fabd1ea53a00bb162 *man/move.Rd
d28add4f994e4b9b07aa0d2322ec555f *man/msf.Rd
cf7b592ad775090381c3527efc014b43 *man/n2s.Rd
9e83472fad2ce526e46f4f2cffb42d00 *man/oriloc.Rd
5c54fd8ebab5c024c5ae36628dca7397 *man/pK.Rd
56afbbbf5ea360c7f53d43eba732aee8 *man/parser.socket.Rd
723e1c897ddc1cd527e4b68e72b61d16 *man/peakabif.Rd
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